Here's how I did it, and I just went from server 2003 SP2 to server 2012 R2. I ran the software and let it install, just don't run the wizard after the software installs. When the time came to move over, I shut the services down on the old server and ran the wizard on the new and voila, I was back up and running. I even separated everything this time, Poller/Application server, SQL server and now dedicated NTA flow server. Went like clock work.
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